Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6451287-SRR7203995/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  317,324,542
 Normal Paired: 306,927,188 (96.72%)
 Chimeric Paired: 6,763,685 (2.13%)
 Chimeric Ambiguous: 723,453 (0.23%)
 Unmapped: 2,910,216 (0.92%)
 Ligation Motif Present: 82,467 (0.03%)
Alignable (Normal+Chimeric Paired): 313,690,873 (98.85%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-22T15:19:42,978]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 51,940,406 (16.37%)
PCR Duplicates: 261,750,467 (82.49%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 52,066,299
Intra-fragment Reads: 24,261,534 (7.65% / 46.71%)
Below MAPQ Threshold: 9,206,128 (2.90% / 17.72%)
Hi-C Contacts: 18,472,744 (5.82% / 35.57%)
 Ligation Motif Present: 10,412  (0.00% / 0.02%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 26%
Inter-chromosomal: 6,313,056  (1.99% / 12.15%)
Intra-chromosomal: 12,159,688  (3.83% / 23.41%)
Short Range (<20Kb): 8,285,102  (2.61% / 15.95%)
Long Range (>20Kb): 3,874,540  (1.22% / 7.46%)